Singularity: Application containers for Linux

A DSL for data-driven computational pipelines

Simplify HPC and Batch workloads on Azure

HPC Container Maker

Container-native workflow execution and automation engine.

A docker image for converting docker images to singularity images.

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

Molecular dynamics and Monte Carlo soft matter simulation on GPUs.

The Singularity implementation of the Kubernetes Container Runtime Interface

Singularity implementation of k8s operator for interacting with SLURM.

server for storage and management of singularity images

Analysis pipeline to detect germline or somatic variants from WGS / targeted sequencing

Snakemake pipelines for nanopore sequencing data archiving and processing

A extremely fast ioc container for high performance applications

Nextflow pipeline for analysis of direct RNA Nanopore reads

📦 🐳 Dockerfiles and documentation on tools for public health bioinformatics

Tutorial for using Singularity containers

Hex-mesh simplification and optimization

Sherlock Port Forwarding Utility

Create container images for using Julia packages (especially useful in environments without Internet access)

A Simple Way of Creating Job Workflows in Go running in Processes, Containers, Tasks, Pods, or Jobs

scientific filesystem: a filesystem organization for scientific software and metadata

orchestration for singularity containers (under development)

Nextflow basic tutorial for newbie users

streamlined singularity python client (spython) for singularity

software to generate a reproducible container with a battery of experiments

Singularity 101

COMP Superscalar (COMPSs) is a framework which aims to ease the development and execution of applications for distributed infrastructures, such as Clusters, Grids and Clouds.

Generic germline variant annotation pipeline

convert a singularity image back to Docker, full circle! #containerfriends