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The Wayback Machine - http://web.archive.org/web/20210227164310/https://github.com/topics/population-genetics
Here are
137 public repositories
matching this topic...
An analysis and visualization platform for 'omics data
Updated
Feb 27, 2021
Python
Tools to work with variant call format files
An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
Updated
Aug 22, 2020
Perl
🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
Fast calculations of linkage-disequilibrium in large-scale human cohorts
PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)
Updated
Feb 22, 2021
Python
Updated
Feb 21, 2021
Python
A pipeline to select optimal markers for microbial phylogenomics, population genetics and genomic taxonomy
Updated
Jan 31, 2021
Perl
deep learning prediction of geographic location from individual genome sequences
Updated
Jan 20, 2021
Python
Forward-time simulation in Python using fwdpp
An R package for running reproducible, automated ADMIXTOOLS analyses
rhierbaps: R implementation of hierBAPS
strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.
Pinpoints the mutation favored by selection
Updated
Aug 4, 2020
Python
Utilities for analyzing next generation sequencing data.
Updated
Nov 20, 2020
Shell
Fast algorithms for computing XX^T for binary matrices
Multisample Variant Format ToolKit
Updated
Dec 18, 2020
Python
Causal Mixture Model for GWAS summary statistics
starmie: plotting and inference for population structure models 🌟
ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium
Repo to analyze population genetic data with many different methods
SNP genotyping in polyploids
Dockerfile(s) for population genetics
Updated
May 10, 2019
Dockerfile
Barton and Zeng (2019) - Pipeline for great tit indel analysis.
Updated
Apr 8, 2019
Python
Repository of code for the paper "The evolutionary history of Neandertal and Denisovan Y chromosomes" by Petr et al.
Updated
Jul 13, 2020
Jupyter Notebook
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Hi there,
I wonder if it would be possible to add a feature in the pipeline allowing libraries made with different adapter sequences to be processed in the same run.
For example, my colleagues and I are often working with a mixture of Illumina and BGI (4 channel) sequencing data and it would be cool to be able run these data together, instead of having to run adapter removal separately for eac