Blast is a full text search and indexing server, written in Go, built on top of Bleve.

SeqAn's official repository.

MMseqs2: ultra fast and sensitive search and clustering suite

Intuitive local web frontend for the BLAST bioinformatics tool

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

A Python API for the RCSB Protein Data Bank (PDB)

LAMBDA – the Local Aligner for Massive Biological DatA

Genome wide orthology inference and dNdS estimation

Collection of scripts for bacterial genomics

An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵

MView extracts and reformats the results of a sequence database search or multiple alignment.

Microsoft Azure HPC & Big Compute

BlasterJS - an open source JS library to display Blast results

Massive Scale BLAST Sequence Searches with R

🌠 Easily download genomes and build BLAST/Bowtie indexes in Python

Course materials for the IBioIC Introduction to Bioinformatics training course

Django website project for common sequence search tools.

The BiomolecularStructures package provides several Bioinformatics-related modules for Julia.

Divide and Conquer BLAST: using grid engines to accelerate NCBI-BLAST+ and other sequence analysis tools

MFannot is a program for the annotation of mitochondrial and plastid genomes

PrimerServer2: a high-throughput primer design and specificity-checking platform

Life is short, *****.

Divergent Virus & Mobile Element Genome Annotation Pipeline

Most up-to-date scripts used in the Palumbi lab

Create an arc/curve line animation using CABasicAnimation animation

Repository-based plasmid design

Assign taxonomy with blast, can be used for qiime

SparkBLAST is a parallelization of a sequence alignment application (BLAST) that employs cloud computing for the provisioning of computational resources and Apache Spark as the coordination framework. Here you will find suplementary material to the article entitled "SparkBLAST: Scalable BLAST processing using in-memory operations", submitted to the BMC Bioinformatics journal.

Open Reading Frame prediction tool

Toggle Player Air Blast