Official git repository for Biopython (originally converted from CVS)

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

A collaboratively written review paper on deep learning, genomics, and precision medicine

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

Official code repository for GATK versions 4 and up

A versatile pairwise aligner for genomic and spliced nucleotide sequences

Data intensive science for everyone.

tools for working with genome variation graphs

Scalable genomic data analysis.

Python and C++ code for reading and writing genomics data.

Scripts to download genomes from the NCBI FTP servers

Tools to process and analyze deep sequencing data.

📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.

C++ library and cmdline tools for parsing and manipulating VCF files

A modern genome browser built with JavaScript and HTML5.

Python library to handle Gene Ontology (GO) terms

Python library to facilitate genome assembly, annotation and comparative genomics

The next version of bwa-mem

A fast and sensitive gapped read aligner

Java utilities for Bioinformatics

Ultra-fast and memory-efficient (meta-)genome assembler

Efficient pythonic random access to fasta subsequences

[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

An open source platform for managing and analyzing biomedical big data

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

JavaScript VisualizationTools

annotate a VCF with other VCFs/BEDs/tabixed files

A comprehensive tutorial about GWAS and PRS

Haplotype VCF comparison tools

A high-performance, Pythonic language for bioinformatics