Galaxy Project

Repositories

• tools-iuc

  Tool Shed repositories maintained by the Intergalactic Utilities Commission

  tools usegalaxy toolshed wrappers iuc
  HTML MIT 259 80 174 (4 issues need help) 115 Updated Sep 13, 2020

• SARS-CoV-2

  Ongoing analysis of COVID-19 using Galaxy, BioConda and public research infrastructures

  usegalaxy 2019-ncov coronavirus covid covid19 covid-2019
  Jupyter Notebook MIT 61 101 8 6 Updated Sep 13, 2020

• galaxy

  Data intensive science for everyone.

  docker science workflow bioinformatics pipeline genomics workflow-engine
  Python 646 764 1,297 (131 issues need help) 141 Updated Sep 12, 2020

• galaxy-hub

  Galaxy Community Hub

  community documentation home homepage hub usegalaxy
  Pug 153 41 48 (1 issue needs help) 1 Updated Sep 12, 2020

• infrastructure-playbook

  Ansible playbook for managing Galaxy infrastructure. For the playbook managing Galaxy itself, see https://github.com/galaxyproject/usegalaxy-playbook/
  HTML MIT 10 5 5 6 Updated Sep 11, 2020

• ansible-common-roles

  A collection of simple Ansible roles for common (mostly system) tasks
  Python MIT 5 12 0 0 Updated Sep 11, 2020

• galaxykubeman-helm

  Helm chart for Galaxy KubeMan used for deploying Galaxy alongside its dependencies (NFS, CVMFS, and CloudMan)
  Shell MIT 2 0 0 0 Updated Sep 11, 2020

• cloudlaunch

  Easily launch cloud applications.

  python django angular cloud multi-cloud
  Python 36 38 24 0 Updated Sep 11, 2020

• usegalaxy-playbook

  Ansible Playbook for usegalaxy.org

  python ansible playbook usegalaxy
  Shell AFL-3.0 15 21 102 (1 issue needs help) 3 Updated Sep 11, 2020

• video-lectures

  Forked from jxtx/covid-lessons
  CSS 2 0 0 0 Updated Sep 10, 2020

• cloudman

  Easily create and manage compute clusters on any Cloud.

  usegalaxy cloudman
  Python 22 31 4 (1 issue needs help) 0 Updated Sep 10, 2020

• ansible-cvmfs

  An Ansible role for installing and configuring CernVM-FS (CVMFS)
  C 5 5 1 0 Updated Sep 10, 2020

• gx-it-proxy
  1 package JavaScript 3 1 1 0 Updated Sep 10, 2020

• tools-devteam

  Contains a set of Galaxy Tools mostly written by the Galaxy Team.

  tools usegalaxy toolshed
  Python 82 34 65 10 Updated Sep 9, 2020

• p4

  Proper Prior Planning Prevents Poorly Performed PRs...Probably

  bot pr pull-requests
  Python 4 2 3 0 Updated Sep 9, 2020

• training-material

  A collection of Galaxy-related training material

  training tutorial materials ngs metagenomics rnaseq proteomics
  HTML MIT 389 164 90 29 Updated Sep 9, 2020

• planemo

  Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training materials.

  cli sdk click usegalaxy commonwl
  Python 65 57 215 (14 issues need help) 9 Updated Sep 8, 2020

• planemo-monitor

  Planemo scripting to monitor repositories and register tool containers.
  Shell 8 2 2 1 Updated Sep 3, 2020

• ansible-galaxy-toolshed

  An Ansible role for managing a Galaxy (http://galaxyproject.org) Tool Shed server. For a role to install Galaxy itself, see https://github.com/galaxyproject/ansible-galaxy
  Python 2 4 0 0 Updated Sep 1, 2020

• galaxy-helm

  Minimal setup required to run Galaxy under Kubernetes
  TSQL MIT 26 18 16 5 Updated Aug 30, 2020

• usegalaxy-tools

  usegalaxy.* common tools
  Shell 18 7 6 6 Updated Aug 25, 2020

• ansible-repos
  1 0 0 0 Updated Aug 25, 2020

• starforge-recipes

  Build recipes for Galaxy Starforge
  Shell MIT 6 0 7 1 Updated Aug 24, 2020

• pulsar

  Distributed job execution application built for Galaxy
  Python Apache-2.0 33 30 52 (5 issues need help) 7 Updated Aug 15, 2020

• ansible-pulsar

  An Ansible role for managing a Pulsar (https://github.com/galaxyproject/pulsar) server.
  6 4 1 2 Updated Aug 14, 2020

• gxformat2

  Galaxy Workflow Format 2
  Python 2 4 5 0 Updated Aug 12, 2020

• ansible-galaxy-extras

  Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproject/ansible-galaxy with production services including nginx, uwsgi, supervisor, protftp, and slurm.
  Shell 36 10 18 7 Updated Aug 4, 2020

• galaxy-lib Archived

  Subset of Galaxy (http://galaxyproject.org/) core code designed to be used as a library.

  python library usegalaxy
  Python 21 11 7 8 Updated Jul 22, 2020

• kc-align
  Python AFL-3.0 0 0 0 0 Updated Jul 22, 2020

• bioblend

  A Python library for interacting with Galaxy and CloudMan API

  api api-client usegalaxy cloudman
  Python MIT 87 68 31 4 Updated Jul 18, 2020