Our laboratory works to develop computational genomics methods for to understand cellular heterogeneity at the level of gene expression and splicing.
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Cincinnati Children's Hospital and Medical Research Center
- Cincinnati, Ohio
- https://www.cincinnatichildrens.org/bio/s/nathan-salomonis
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altanalyze Public
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available …
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BAM-to-Junction-BED Public
Uses SAMTools, Python 2.7 and PySam to extract either junctions or exon read counts for known and novel junctions and exons. Requires an indexed BAM file with genomic coordinates
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awesome-single-cell Public
Forked from seandavi/awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
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scRNA-tools Public
Forked from scRNA-tools/scRNA-tools
Table of software for the analysis of single-cell RNA-seq data.
R
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kallisto-splice Public
Forked from kpeaton/kallisto-splice
Modification of kallisto 0.43.1 for identifying splice junctions
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