Pinned

1. TRON-Bioinformatics/neofox Public

   Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors

   Python 22 5

2. TRON-Bioinformatics/covigator Public

   CoVigator - Monitoring SARS-CoV-2 mutations

   Python 10 1

3. TRON-Bioinformatics/tronflow-mutect2 Public

   Nextflow pipeline for Mutect2 somatic variant calling best practices

   Nextflow 15 2

4. TRON-Bioinformatics/covigator-ngs-pipeline Public

   A Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, LoFreq and iVar.

   Nextflow 14 5

5. TRON-Bioinformatics/vafator Public

   Annotate variants in a VCF file with technical annotations from one or more BAMs

   Jupyter Notebook 5

6. TRON-Bioinformatics/omicron-analysis Public

   Analysis code, data and figures on the omicron MHC binding paper

   Jupyter Notebook 2