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https://vsoch.github.io

Highlights

Arctic Code Vault Contributor
Developer Program Member

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scif

scientific filesystem: a filesystem organization for scientific software and metadata

Python 26 10
expfactory/expfactory

software to generate a reproducible container with a battery of experiments

Python 23 8
singularityhub/sregistry

server for storage and management of singularity images

JavaScript 61 32
forward

Sherlock Port Forwarding Utility

Shell 27 13
watchme

Reproducible watchers for research

HTML 747 30
qme

QueueMe is a job queue, manager, and dashboard

Python 7 2

5,094 contributions in the last year

Activity overview

Contributed to USRSE/usrse.github.io, vsoch/askci, rseng/software and 5 other repositories

Contribution activity

October 2020

vsoch/mlflow Python Oct 22
vsoch/training-data-analyst Jupyter Notebook Oct 21
vsoch/quay Python Oct 12
vsoch/yeast-ideogram Jupyter Notebook Oct 4
vsoch/lookout Go Oct 2

Created a pull request in snakemake/snakemake that received 34 comments

Test/gls directory output

This fix cannot be tested because I currently dont have access to a Google Cloud account, but Ill open it for review and discussion. This PR also d…

+114 −29 • 34 comments

refactoring gene explorer to look like others Oct 27
small tweaks to navigation Oct 26
Updates from anastasia between 7-17 and 10-23 Oct 24
completed updated to second menu navigation Oct 24
update of navigation to include second bar Oct 23
adding basic subnavigation to menus Oct 21
updates to browse and phenotype table Oct 20
adding view for server rendering of datasets table Oct 18
Updates to phenotype, conditions, and papers search. Oct 14
refactor of conditions page, condition tag page creation Oct 11
tweaks to interface, adding plot to dataset similarity table Oct 8
updates for dataset and similarity tables and dataset plot view Oct 5
finishing up new interactive dataset explorer view Oct 3

Add/authentication Oct 26
adding docs for reggie Oct 19
adding conformance test run to github actions Oct 12
Adding start of docs Oct 12
start of work for distribution-spec conformance test Oct 10

Add environment variable to pass if PR exists Oct 20
adding PASS_IF_EXISTS Oct 19
replacing set-env with new environment syntax Oct 12

updates to remove contact Oct 16
adding separate pages for quick links/groups Oct 9
small changes to info page and template instructions Oct 9

adding example dataset Oct 22
updating interface Oct 22

updating recommend-o-matic with updated data, generation script, and … Oct 27

Add singularity container to project Oct 22

Possible typos in hello-green deployment Oct 21

removing check for expiration on jobs Oct 21

adding simple validation checks to reggie client Oct 19

last changes for working with django-oci Oct 19

testing verison that allows for empty body on PR Oct 16

allowing for empty body Oct 16

testing fixed branch Oct 16

update for 3.6.4 Oct 13

GitHub Actions set-env deprecation Oct 12

adding check for GitHub token and changing info formatting Oct 3

Add Michigan job Oct 27
Create 2020-10-26-nominations-open.md Oct 26
adding US-RSE version of BSSw post on Oct 25
Update 2020-09-29-sc-election-announce.md Oct 23
[tributors] contributors/update-2020-10-23 Oct 23
Add new jobs from Slack Oct 23
[tributors] contributors/update-2020-10-17 Oct 17
Fal 2020 community calls Oct 17
[tributors] contributors/update-2020-10-14 Oct 14
2020-10-13-community-call-dei Oct 14
Updating Membership Counts Oct 1

Update from update/software-2020-10-25 Oct 25
Update from annotate/criteria-kir0ul-2020-10-11/20-57-37 Oct 11
Update from annotate/taxonomy-kir0ul-2020-10-11/20-58-34 Oct 11
Update from annotate/taxonomy-vsoch-2020-10-11/20-27-06 Oct 11
Update from annotate/criteria-vsoch-2020-10-11/20-26-37 Oct 11
Update from update/software-2020-10-11 Oct 11
Add taxonomy annotations. Oct 11
Add new annotations. Oct 10
Update from annotate/taxonomy-vsoch-2020-10-04/19-33-37 Oct 4
Update from annotate/criteria-vsoch-2020-10-04/19-33-01 Oct 4

Create 2020-10-15-nick-may.md Oct 15
Mike spencer Oct 1

PASS_IF_EXISTS option, to not error out when a matching PR already is open Oct 20

Adding a post for Autograd (and JAX) Oct 18

Adds phenotype for Alex Koufos Oct 17

fix issue #13: extra or missing graph points on dimension change Oct 14

complete path for scif install inside Docker image Oct 13

apply latency-wait argument value to GLS job Oct 6

Updating Membership Map Oct 4

Fix/155 change to return results from detect when recipe does not contain filters Oct 2

[opensource-heartbeat] opensource-heartbeat/update-2020-10-02 Oct 2

Natacha Bot Speaks! Oct 1

Created an issue in eweitz/ideogram that received 9 comments

Development of Yeast Ideogram

hey @eweitz! As promised, I had a chance to start working on deriving data to generate the yeast ideaogram with expression data. I have some questi…

9 comments

[CRITERIA] Oct 25
[TAXONOMY] Oct 25
[TAXONOMY] Oct 18
[CRITERIA] Oct 18
[TAXONOMY] Oct 11
[CRITERIA] Oct 11
[CRITERIA] Oct 4
[TAXONOMY] Oct 4
[Hacktoberfest] Call for contributions! Oct 3

Add GitHub Action for conformance test Oct 12
issue when special characters in name (sometimes) Oct 12
Add user authentication Oct 12
Create interfaces for example Oct 12
Additional cloud storage options Oct 12
Anticipated bug: different repositories with blobs with the same digest Oct 12

Questions for Reggie "specification" Oct 19
Digest calculation functions? Oct 19
Question: digest for config in README Oct 18
Question: should we even allow a request when replacements aren't done? Oct 17
Discussion for validation of config Oct 15

Best practice for GitHub action Oct 12
Small issues that I ran into running tests Oct 10

Github Auth Needed For Basic Operations Oct 2
Potential features for lookout! Oct 2

check_badge should not system exit Oct 25

Body can be empty Oct 16

[distrubution-spec] Add custom transport adapter to client Oct 15

Issue that needs reproducing: multiple points Oct 13

set-env is being deprecated Oct 12

Instance control broken with 3.6.0 Oct 6

Software Showcase! Oct 4

Any reason to require personal access token? Oct 3

1 contribution in private repositories Oct 16

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