Image process framework based on plugin like imagej, it is esay to glue with scipy.ndimage, scikit-image, opencv, simpleitk, mayavi...and any libraries based on numpy

QuPath - Bioimage analysis & digital pathology

Read and write TIFF files. Forked from https://pypi.org/project/tifffile

Collection of mathematical morphology methods and plugins for ImageJ

KNIME Image Processing Extension

sciview is an ImageJ-based tool for visualization and interaction with ND data

Fully Ported to Python from ImageJ's Background Subtractor. Rolling ball and sliding paraboloid background subtraction algorithms.

Detect ridges / lines with imagej

Tiny Image in Javascript - Edge Detection Algorithms

ImageJS--Image analysis in the browser with ImageJ

Image processing software for textbooks by W. Burger & M. Burge

An interactive image processing program for biologists written in Python.

Matlab function to import ROIs from ImageJ

🔬🍸 Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ

Plugins for bone image analysis

Microscope control and image acquisition integrated with ImageJ.

ImageJ functions and macros for working with thermal image files

Non local means filter for ImageJ

An R Package for general purpose TIFF file I/O which plays nice with ImageJ

ImageJ macros and scripts written at the imaging facility MRI

Macros for ImageJ/FIJI

A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification

The ImageJ framework for semi-automated tracing and analysis of neurons

Detection of Molecules plugin for ImageJ, Utrecht University

Z-stack Depth Colorcode ImageJ FIJI plugin

Common Java library for digital image processing books by Burger & Burge

ImageJ library to detect and analyse connected components (blobs) in binary images

Read and write ImageJ ROI format. Forked from https://pypi.org/project/roifile

A Fiji plugin for object detection and tracking based on MaskRCNN.

XitoSBML - the spatial SBML plugin for ImageJ