Computational Systems Biology

COLLECTED BY

Organization: Archive Team

Formed in 2009, the Archive Team (not to be confused with the archive.org Archive-It Team) is a rogue archivist collective dedicated to saving copies of rapidly dying or deleted websites for the sake of history and digital heritage. The group is 100% composed of volunteers and interested parties, and has expanded into a large amount of related projects for saving online and digital history.

History is littered with hundreds of conflicts over the future of a community, group, location or business that were "resolved" when one of the parties stepped ahead and destroyed what was there. With the original point of contention destroyed, the debates would fall to the wayside. Archive Team believes that by duplicated condemned data, the conversation and debate can continue, as well as the richness and insight gained by keeping the materials. Our projects have ranged in size from a single volunteer downloading the data to a small-but-critical site, to over 100 volunteers stepping forward to acquire terabytes of user-created data to save for future generations.

The main site for Archive Team is at archiveteam.org and contains up to the date information on various projects, manifestos, plans and walkthroughs.

This collection contains the output of many Archive Team projects, both ongoing and completed. Thanks to the generous providing of disk space by the Internet Archive, multi-terabyte datasets can be made available, as well as in use by the Wayback Machine, providing a path back to lost websites and work.

Our collection has grown to the point of having sub-collections for the type of data we acquire. If you are seeking to browse the contents of these collections, the Wayback Machine is the best first stop. Otherwise, you are free to dig into the stacks to see what you may find.

The Archive Team Panic Downloads are full pulldowns of currently extant websites, meant to serve as emergency backups for needed sites that are in danger of closing, or which will be missed dearly if suddenly lost due to hard drive crashes or server failures.

Collection: Archive Team: URLs

TIMESTAMPS

The Wayback Machine - http://web.archive.org/web/20210104095128/https://github.com/CSBiology

Repositories

ProteomIQon

F# MIT 4 8 0 0 Updated Dec 31, 2020
BioFSharp.Mz

BioFSharp.Mz - modular computational proteomics

F# MIT 6 10 2 0 Updated Dec 21, 2020
FSharp.FGL

Functional graph library for F#

fsharp graph functional-graph

F# Unlicense 9 25 5 0 Updated Dec 10, 2020
MzIO

Generic data model to unify various readers and writers for different formats used in protein mass spectrometry

F# MIT 4 4 1 0 Updated Dec 3, 2020
TMEA

Thermodynamically Motivated Enrichment Analysis (TMEA) is a new approach to gene set enrichment analysis.

bioinformatics plotly f-sharp biostatistics genes gsea enrichment-score

F# MIT 0 6 2 0 Updated Dec 2, 2020
staged-recipes
Forked from conda-forge/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks

Python BSD-3-Clause 2,202 0 0 0 Updated Oct 19, 2020
conda-dotnetcore-sdk

MIT 0 0 0 0 Updated Sep 30, 2020
BioFSharp

Open source bioinformatics and computational biology toolbox written in F#.

docker bioinformatics fsharp biology datascience biostatistics amino-acids

F# MIT 27 72 23 (2 issues need help) 0 Updated Sep 18, 2020
Deedle
Forked from fslaborg/Deedle
Easy to use .NET library for data and time series manipulation and for scientific programming

F# BSD-2-Clause 177 0 0 0 Updated Sep 9, 2020
DeedleExtensions

F# BSD-2-Clause 1 4 0 1 Updated Sep 8, 2020
FSharpML

Library for the FSharp friendly usage of the ML.NET project. For documentation visit:

F# Unlicense 4 19 0 0 Updated Jul 28, 2020
WPFB_Uebungen

Übungen begleitend zu der Vorlesung Wissenschaftliches Programmieren für Biologen

Jupyter Notebook MIT 4 2 0 1 Updated Jun 24, 2020
CsbScaffold

Basic scaffold for biological data analysis using FSharp

F# 5 9 7 0 Updated May 17, 2020
LibraryTemplate

Dotnet new template for creating library projects with the set of tooling we use

F# MIT 0 0 0 0 Updated Apr 20, 2020
CSBlog

The blog about all things CSB

F# Unlicense 2 5 0 0 Updated Apr 15, 2020
BioFSharp.Recipes

Recipes for various workflows in computational biology using BioFSharp and its various subprojects

Jupyter Notebook MIT 0 2 0 0 Updated Apr 1, 2020
FSharpAux

Auxiliary functions and data structures for F# programming language

F# MIT 15 16 1 0 Updated Feb 13, 2020
FSharpGephiStreamer

F# functions for streaming any kind of graph/network data to the network visualization tool gephi

visualization fsharp exploratory-data-analysis data-analysis gephi graph-visualization streaming-graph-data

F# MIT 5 21 0 0 Updated Jun 17, 2019
MzLite

Reader and writer for different mzData formats used in protein mass spectrometry

C# 3 10 1 0 Updated May 20, 2019
ProjectScaffold
Forked from fsprojects/ProjectScaffold
A prototypical .NET solution (file system layout and tooling), recommended for F# projects

F# Unlicense 167 2 0 0 Updated May 17, 2019
DataFrame

data frame library for .NET based on ML.NET IDataView

F# Unlicense 2 3 0 0 Updated Feb 13, 2019
FsDocker

F# Client for Docker Remote API based on Docker.DotNet Project

F# Unlicense 1 4 0 0 Updated Feb 10, 2019
FsMzLite

F# Unlicense 3 6 0 0 Updated Apr 19, 2018
FunctionalAnnotatorWeb

Web site for manual curation of functional annotation of different model plant systems

C# MIT 0 0 0 0 Updated Dec 14, 2017

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