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Preprocessing pipeline on Brain MR Images through FSL and ANTs, including registration, skull-stripping, bias field correction, enhancement and segmentation.
Very simple issue. When you start up HNN two windows appear ('param' and 'model schematics'), plus a little dialogue box that says 'Welcome to HNN! Default parameter file loaded. Press 'Run simulation' to display simulation output.' with a little 'run' button on it.
First time I started HNN that dialogue box opened offscreen, so I didn't know it was there. Because I didn't click 'run', n
The registered atlas file is always saved in the same orientation. I understand this can be useful for some applications but in the most common case where you want to analyse your data by overlaying the atlas onto the data it is quite cumbersome because one has to track the input orientation throughout the analysis pipeline.
Is there a possibility to save the registered atlas in the same orient
Hi,
Very simple issue. When you start up HNN two windows appear ('param' and 'model schematics'), plus a little dialogue box that says 'Welcome to HNN! Default parameter file loaded. Press 'Run simulation' to display simulation output.' with a little 'run' button on it.
First time I started HNN that dialogue box opened offscreen, so I didn't know it was there. Because I didn't click 'run', n