sequencing

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

Official code repository for GATK versions 4 and up

Data intensive science for everyone.

Analysis of single cell RNA-seq data course

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

Simple & Efficient data access for Scala and Scala.js

A Python library for creating and manipulating musical patterns, designed for use in algorithmic composition, generative music and sonification. Can be used to generate MIDI events, MIDI files, OSC messages, or custom events.

De novo assembly from Oxford Nanopore reads.

A Java API for high-throughput sequencing data (HTS) formats.

A repository for setting up a RNAseq workflow

Analysis Pipeline for Single Cell ATAC-seq

Rapid large-scale prokaryote pan genome analysis

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

Finds SNP sites from a multi-FASTA alignment file

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

A tool to circularize genome assemblies

UGENE is free open-source cross-platform bioinformatics software

A minimal and human-readable language and environment for the live coding of algorithmic electronic music.

A collection of scripts and notes related to genomics and bioinformatics

Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

Antimicrobial Resistance Identification By Assembly

Genomics Extension for SQLite

🚀 A sequencing simulator

BAM Statistics, Feature Counting and Annotation

Accurate and flexible loops calling tool for 3D genomic data.

Polyrhythmic Sequencer library for Web Audio API.