hadley / r4ds
R for data science: a book
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R for data science: a book
R toolkit for single cell genomics
GPT RStudio addins that enable GPT assisted coding, writing & analysis
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
A curated list of awesome network analysis resources.
Inferring CNV from Single-Cell RNA-Seq
Robyn is an experimental, automated and open-sourced Marketing Mix Modeling (MMM) package from Facebook Marketing Science. It uses various machine learning techniques (Ridge regression, multi-objective evolutionary algorithm for hyperparameter optimisation, gradient-based optimisation for budget allocation etc.) to define media channel efficienc…
NicheNet: predict active ligand-target links between interacting cells
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
Simple Features for R
Fast, sensitive and accurate integration of single-cell data with Harmony
Make Complex Heatmaps
FIESTA (Forest Inventory ESTimation and Analysis) is a research estimation tool for analysts that work with sample-based inventory data from the U.S. Department of Agriculture, Forest Service, Forest Inventory and Analysis (FIA) Program. Follow the link below for more information:
Tidy Messy Data
Community-provided extensions to Seurat
Statistical Rethinking Course for Jan-Mar 2023
Accurate sample inference from amplicon data with single nucleotide resolution
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
'ggplot2' Based Publication Ready Plots
brms R package for Bayesian generalized multivariate non-linear multilevel models using Stan
Tools to make an R developer's life easier
R package for detecting doublets in single-cell RNA sequencing data
Easy interactive web applications with R