| City served | Province | ICAO | IATA | Airport name | Coordinates | Runway |
|---|---|---|---|---|---|---|
| Bujumbura | Bujumbura Mairie | HBBA | BJM | Melchior Ndadaye International Airport | 3°19′26.2″S 29°19′6.6″E / 3.323944°S 29.318500°E / -3.323944; 29.318500 (Bujumbura International Airport (Bujumbura)) | 17/35: 11,990 x 187, Asphalt |
| Gitega | Gitega | HBBE | GID | Gitega Airport | 3°25′2.9″S 29°54′43.1″E / 3.417472°S 29.911972°E / -3.417472; 29.911972 (Gitega Zenngo Airport (Gitega)) | 12/30: 3,270 x 66, Grass H1: 82 dia., Grass H2: 82 dia., GRASS |
| Nyanza-Lac | Makamba | HBBL | Nyanza-Lac Airport - Closed | 4°20′20.9″S 29°36′2.5″E / 4.339139°S 29.600694°E / -4.339139; 29.600694 (Nyanza-Lac Airport (Nyanza-Lac)) | Closed | |
| Kirundo | Kirundo | HBBO | KRE | Kirundo Airport | 2°32′40.9″S 30°5′41.0″E / 2.544694°S 30.094722°E / -2.544694; 30.094722 (Kirundo Airport (Kirundo)) | 12/30: 3,480 x 75, Grass |