An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang

Versatile open-source tool for microbiome analysis

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs

Viral genomics analysis pipelines

An efficient FASTQ manipulation suite

Detect and visualize target mutations by scanning FastQ files directly

Simple FASTQ quality assessment using Python

A collection of scripts and notes related to genomics and bioinformatics

FastQC port to Qt5: A quality control tool for high throughput sequence data.

💾 📃 "Reads to report" for public health and clinical microbiology

A DNA Sequence Alignment/Map (SAM) library for Clojure

Efficient handling of FASTQ files from Python

a python package for fast random access to sequences from plain and gzipped FASTA/Q files

My bioinfo toolbox

Exome/Capture/RNASeq Pipeline Implementation using snakemake

Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences

A golang package and a CLI for manipulating small k-mers (k <= 32) optional with Taxids but without frequency information

Randomly subsample sequencing reads to a specified coverage

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

Ultra-fast Multi-threaded FASTQ Demultiplexing

Parse and process FASTA and FASTQ formatted files of biological sequences.

Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI).

Simulate metagenomic short reads from one or more populations.

Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.

Sync paired-end FASTA/Q files and keep singleton reads