List of Computer Science courses with video lectures.

Analytical Web Apps for Python, R, Julia, and Jupyter. No JavaScript Required.

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

A DSL for data-driven computational pipelines

Conda recipes for the bioconda channel.

A curated list of awesome Bioinformatics libraries and software.

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

Official code repository for GATK versions 4 and up

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

A versatile pairwise aligner for genomic and spliced nucleotide sequences

Robust, flexible and resource-efficient pipelines using Go and the commandline

Data intensive science for everyone.

Toolkit for processing sequences in FASTA/Q formats

Single-Cell Analysis in Python. Scales to >1M cells.

A full spaCy pipeline and models for scientific/biomedical documents.

Scalable genomic data analysis.

Aggregate results from bioinformatics analyses across many samples into a single report.

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

Python and C++ code for reading and writing genomics data.

A plotly.js React component from Plotly 📈

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang

A cross-platform, efficient and practical CSV/TSV toolkit in Golang

Unix, R and python tools for genomics and data science

Biostar Q&A

BWK awk modified for biological data

Scripts to download genomes from the NCBI FTP servers

Tools to process and analyze deep sequencing data.