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Orthologous MAtrix





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OMA (Orthologous MAtrix) is a database of orthologs extracted from available complete genomes.[1][2] The orthology predictions of OMA are available in several forms:

  • OMA Groups: a set of genes across different species which are all orthologous.
  • OMA Hierarchical Groups: the set of all genes that have evolved from a single ancestral gene in a given taxonomic range.
  • OMA Genome Pair view: the list of all predicted orthologs between two species.
    • OMA
    Content
    Descriptionorthology inference among 1000 complete genomes.
    Contact
    LaboratoryETH Zurich
    AuthorsChristophe Dessimoz
    Adrian Schneider
    Adrian Altenhoff
    Gaston H. Gonnet
    Primary citationAltenhoff et al.[1]
    Release date2004
    Access
    Websiteomabrowser.org
    Download URLhttp://omabrowser.org/All/download.html
    Web service URLwsdl
    Miscellaneous
    Data release
    frequency    		2 releases per year

    See also

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    References

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    1. ^ a b Altenhoff, Adrian M; Schneider Adrian; Gonnet Gaston H; Dessimoz Christophe (Jan 2011). "OMA 2011: orthology inference among 1000 complete genomes". Nucleic Acids Res. 39 (Database issue). England: D289-94. doi:10.1093/nar/gkq1238. PMC 3013747. PMID 21113020.
  • ^ Altenhoff, Adrian M; Glover, Natasha M; Train, Clément-Marie; Kaleb, Klara; Warwick Vesztrocy, Alex; Dylus, David; de Farias, Tarcisio M; Zile, Karina; Stevenson, Charles; Long, Jiao; Redestig, Henning; Gonnet, Gaston H; Dessimoz, Christophe (2018). "The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces". Nucleic Acids Research. 46 (D1): D477–D485. doi:10.1093/nar/gkx1019. ISSN 0305-1048. PMC 5753216. PMID 29106550.


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    Last edited on 7 January 2022, at 14:18  





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    ●This page was last edited on 7 January 2022, at 14:18 (UTC).
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