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{{Short description|One of the two major RNA components of the ribosome}} |
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{{missing information|structure (universal)|date=December 2020}} |
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Associated with a number of [[ribosomal protein]]s, the SSU rRNA forms the small subunit of the ribosome. It is encoded by |
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'''Small subunit ribosomal ribonucleic acid''' ('''SSU rRNA''') is the smaller of the two major [[RNA]] components of the [[ribosome]]. |
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⚫ | Associated with a number of [[ribosomal protein]]s, the SSU rRNA forms the small subunit of the ribosome. It is encoded by SSU-[[ribosomal DNA|rDNA]]. |
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{{Infobox rfam |
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| Symbol = SSU |
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| Rfam_clan = CL00111 |
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}} |
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{| class="wikitable sortable" style="text-align: center;" |
{| class="wikitable sortable" style="text-align: center;" |
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|+ Characteristics of the SSU rRNA for exemplary species. |
|+ Characteristics of the SSU rRNA for exemplary species. |
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| Bacterial (Prokaryotic) |
| Bacterial (Prokaryotic) |
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| [[ |
| [[16S ribosomal RNA|16S]] |
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| ''Escherichia coli'' |
| ''Escherichia coli'' |
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| 1,541 nt |
| 1,541 nt |
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| J01859.1 |
| J01859.1 |
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|<ref>{{cite web | url = https://www.ncbi.nlm.nih.gov/nuccore/J01859.1 | title= ''Escherichia coli'' 16S ribosomal RNA | date= 13 June 2017 }}</ref> |
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| Archaeal (Prokaryotic) |
| Archaeal (Prokaryotic) |
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| 1,473 nt |
| 1,473 nt |
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| M38280.1 |
| M38280.1 |
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|<ref>{{cite web | url = https://www.ncbi.nlm.nih.gov/nuccore/M38280.1 | title= ''Halobacterium salinarum'' 16S ribosomal RNA | date= 7 August 1991 }}</ref> |
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| Eukaryotic |
| Eukaryotic |
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| [[ |
| [[18S ribosomal RNA|18S]] |
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| ''Homo sapiens'' |
| ''Homo sapiens'' |
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| 1,969 nt |
| 1,969 nt |
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| M10098.1 |
| M10098.1 |
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|<ref>{{cite web | url = https://www.ncbi.nlm.nih.gov/nuccore/M10098.1 | title= ''Homo sapiens'' 18S ribosomal RNA (nuclear) | date= 2 May 1986 }}</ref> |
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| Mitochondrial |
| Mitochondrial |
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| 954 nt |
| 954 nt |
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| NC_012920.1 |
| NC_012920.1 |
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|<ref name="NCBI NC_012920">''Homo sapiens'' mitochondrion, complete genome. [https://www.ncbi.nlm.nih.gov/nuccore/NC_012920.1 "Revised Cambridge Reference Sequence (rCRS): accession NC_012920"], ''[[National Center for Biotechnology Information]]''. Retrieved on 20 February 2017.</ref><ref>{{cite journal | vauthors = Anderson S, Bankier AT, Barrell BG, de Bruijn MH, Coulson AR, Drouin J, Eperon IC, Nierlich DP, Roe BA, Sanger F, Schreier PH, Smith AJ, Staden R, Young IG | display-authors = 6| title = Sequence and organization of the human mitochondrial genome | journal = Nature | volume = 290 | issue = 5806 | pages = 457–465 | date = April 1981 | pmid = 7219534 | doi = 10.1038/290457a0 | bibcode = 1981Natur.290..457A | s2cid = 4355527 }}</ref> |
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| Plastid |
| Plastid |
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| 1,491 nt |
| 1,491 nt |
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| NC_000932.1 |
| NC_000932.1 |
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|<ref>{{cite web | url = https://www.ncbi.nlm.nih.gov/nuccore/NC_000932.1 | title= ''Arabidopsis thaliana'' 16S ribosomal RNA (chloroplast) | date= 26 September 2019 }}</ref> |
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==Use in phylogenetics== |
==Use in phylogenetics== |
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⚫ | SSU rRNA sequences are widely used for determining [[Phylogenetics|evolutionary relationships]] among organisms, since they are of ancient origin and are found in all known forms of life.<ref name="Woese_1990">{{cite journal | vauthors = Woese CR, Kandler O, Wheelis ML | title = Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya | journal = Proceedings of the National Academy of Sciences of the United States of America | volume = 87 | issue = 12 | pages = 4576–4579 | date = June 1990 | pmid = 2112744 | pmc = 54159 | doi = 10.1073/pnas.87.12.4576 | bibcode = 1990PNAS...87.4576W | authorlink1 = Carl Woese | doi-access = free }}</ref> |
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[[File:PhylogeneticTree, Woese 1990.PNG|thumb|right|500px|Phylogenetic tree based on SSU rRNA sequence comparison, with a color for each of the three domains of life.<ref name="Woese_1990"/>]] |
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SSU rRNA sequences are widely used for |
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==See also== |
== See also == |
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*[[LSU rRNA]]: the '''l'''arge '''s'''ub'''u'''nit ribosomal ribonucleic acid. |
*[[LSU rRNA]]: the '''l'''arge '''s'''ub'''u'''nit ribosomal ribonucleic acid. |
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==References== |
== References == |
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{{reflist}} |
{{reflist}} |
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{{Ribosome subunits}} |
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[[Category:Ribosomal RNA]] |
[[Category:Ribosomal RNA]] |
This article is missing information about structure (universal). Please expand the article to include this information. Further details may exist on the talk page. (December 2020)
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Small subunit ribosomal ribonucleic acid (SSU rRNA) is the smaller of the two major RNA components of the ribosome. Associated with a number of ribosomal proteins, the SSU rRNA forms the small subunit of the ribosome. It is encoded by SSU-rDNA.
SSU rRNA | |
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Identifiers | |
Symbol | SSU |
Rfam | CL00111 |
Other data | |
PDB structures | PDBe |
Type | SSU rRNA size | Species | Length | Accession | Reference |
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Bacterial (Prokaryotic) | 16S | Escherichia coli | 1,541 nt | J01859.1 | [1] |
Archaeal (Prokaryotic) | 16S | Halobacterium salinarum | 1,473 nt | M38280.1 | [2] |
Eukaryotic | 18S | Homo sapiens | 1,969 nt | M10098.1 | [3] |
Mitochondrial | 12S | Homo sapiens | 954 nt | NC_012920.1 | [4][5] |
Plastid | 16S | Arabidopsis thaliana | 1,491 nt | NC_000932.1 | [6] |
SSU rRNA sequences are widely used for determining evolutionary relationships among organisms, since they are of ancient origin and are found in all known forms of life.[7]
Ribosomal RNA / ribosome subunits
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Archaea (70S) |
Small (30S): | ||||||
Bacteria (70S) |
Small (30S): | ||||||
Eukaryotes |
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Ribosomal proteins | (See article table) |