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Contents

   



(Top)
 


1 Characteristics  





2 Use in phylogenetics  





3 See also  





4 References  














SSU rRNA: Difference between revisions







 

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'''Small subunit ribosomal ribonucleic acid''' ('''SSU rRNA''') is the smallest of the two major [[RNA]] components of the [[ribosome]].

{{Short description|One of the two major RNA components of the ribosome}}

{{missing information|structure (universal)|date=December 2020}}

Associated with a number of [[ribosomal protein]]s, the SSU rRNA forms the small subunit of the ribosome. It is encoded by the SSU-[[rDNA]].

'''Small subunit ribosomal ribonucleic acid''' ('''SSU rRNA''') is the smaller of the two major [[RNA]] components of the [[ribosome]].

Associated with a number of [[ribosomal protein]]s, the SSU rRNA forms the small subunit of the ribosome. It is encoded by SSU-[[ribosomal DNA|rDNA]].



{{Infobox rfam

==Characteristics==

| Symbol = SSU

| Rfam_clan = CL00111

}}



==Characteristics==

{| class="wikitable sortable" style="text-align: center;"

{| class="wikitable sortable" style="text-align: center;"

|+ Characteristics of the SSU rRNA for exemplary species.

|+ Characteristics of the SSU rRNA for exemplary species.

Line 14: Line 20:

|-

|-

| Bacterial (Prokaryotic)

| Bacterial (Prokaryotic)

| [[16S_ribosomal_RNA|16S]]

| [[16S ribosomal RNA|16S]]

| ''Escherichia coli''

| ''Escherichia coli''

| 1,541 nt

| 1,541 nt

| J01859.1

| J01859.1

| <ref>{{cite web | url = https://www.ncbi.nlm.nih.gov/nuccore/J01859.1 | title= ''Escherichia coli'' 16S ribosomal RNA }}</ref>

|<ref>{{cite web | url = https://www.ncbi.nlm.nih.gov/nuccore/J01859.1 | title= ''Escherichia coli'' 16S ribosomal RNA | date= 13 June 2017 }}</ref>

|-

|-

| Archaeal (Prokaryotic)

| Archaeal (Prokaryotic)

Line 25: Line 31:

| 1,473 nt

| 1,473 nt

| M38280.1

| M38280.1

| <ref>{{cite web | url = https://www.ncbi.nlm.nih.gov/nuccore/M38280.1 | title= ''Halobacterium salinarum'' 18S ribosomal RNA }}</ref>

|<ref>{{cite web | url = https://www.ncbi.nlm.nih.gov/nuccore/M38280.1 | title= ''Halobacterium salinarum'' 16S ribosomal RNA | date= 7 August 1991 }}</ref>

|-

|-

| Eukaryotic

| Eukaryotic

| [[18S_ribosomal_RNA|18S]]

| [[18S ribosomal RNA|18S]]

| ''Homo sapiens''

| ''Homo sapiens''

| 1,969 nt

| 1,969 nt

| M10098.1

| M10098.1

| <ref>{{cite web | url = https://www.ncbi.nlm.nih.gov/nuccore/M10098.1 | title= ''Homo sapiens'' 18S ribosomal RNA (nuclear) }}</ref>

|<ref>{{cite web | url = https://www.ncbi.nlm.nih.gov/nuccore/M10098.1 | title= ''Homo sapiens'' 18S ribosomal RNA (nuclear) | date= 2 May 1986 }}</ref>

|-

|-

| Mitochondrial

| Mitochondrial

Line 39: Line 45:

| 954 nt

| 954 nt

| NC_012920.1

| NC_012920.1

| <ref name="NCBI NC_012920">''Homo sapiens'' mitochondrion, complete genome. [https://www.ncbi.nlm.nih.gov/nuccore/NC_012920.1 "Revised Cambridge Reference Sequence (rCRS): accession NC_012920"], ''[[National Center for Biotechnology Information]]''. Retrieved on 20 February 2017.</ref>,<ref>{{Cite journal|last=Anderson|first=S.|last2=Bankier|first2=A. T.|last3=Barrell|first3=B. G.|last4=de Bruijn|first4=M. H. L.|last5=Coulson|first5=A. R.|last6=Drouin|first6=J.|last7=Eperon|first7=I. C.|last8=Nierlich|first8=D. P.|last9=Roe|first9=B. A.|date=1981-04-09|title=Sequence and organization of the human mitochondrial genome|url=http://www.nature.com/nature/journal/v290/n5806/abs/290457a0.html|journal=Nature|language=en|volume=290|issue=5806|pages=457–465|doi=10.1038/290457a0}}</ref>

|<ref name="NCBI NC_012920">''Homo sapiens'' mitochondrion, complete genome. [https://www.ncbi.nlm.nih.gov/nuccore/NC_012920.1 "Revised Cambridge Reference Sequence (rCRS): accession NC_012920"], ''[[National Center for Biotechnology Information]]''. Retrieved on 20 February 2017.</ref><ref>{{cite journal | vauthors = Anderson S, Bankier AT, Barrell BG, de Bruijn MH, Coulson AR, Drouin J, Eperon IC, Nierlich DP, Roe BA, Sanger F, Schreier PH, Smith AJ, Staden R, Young IG | display-authors = 6| title = Sequence and organization of the human mitochondrial genome | journal = Nature | volume = 290 | issue = 5806 | pages = 457–465 | date = April 1981 | pmid = 7219534 | doi = 10.1038/290457a0 | bibcode = 1981Natur.290..457A | s2cid = 4355527 }}</ref>

|-

|-

| Plastid

| Plastid

Line 46: Line 52:

| 1,491 nt

| 1,491 nt

| NC_000932.1

| NC_000932.1

| <ref>{{cite web | url = https://www.ncbi.nlm.nih.gov/nuccore/NC_000932.1 | title= ''Arabidopsis thaliana'' 16S ribosomal RNA (chloroplast) }}</ref>

|<ref>{{cite web | url = https://www.ncbi.nlm.nih.gov/nuccore/NC_000932.1 | title= ''Arabidopsis thaliana'' 16S ribosomal RNA (chloroplast) | date= 26 September 2019 }}</ref>

|}

|}



==Use in phylogenetics==

==Use in phylogenetics==

SSU rRNA sequences are widely used for determining [[Phylogenetics|evolutionary relationships]] among organisms, since they are of ancient origin and are found in all known forms of life.<ref name="Woese_1990">{{cite journal | vauthors = Woese CR, Kandler O, Wheelis ML | title = Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya | journal = Proceedings of the National Academy of Sciences of the United States of America | volume = 87 | issue = 12 | pages = 4576–4579 | date = June 1990 | pmid = 2112744 | pmc = 54159 | doi = 10.1073/pnas.87.12.4576 | bibcode = 1990PNAS...87.4576W | authorlink1 = Carl Woese | doi-access = free }}</ref>

[[File:PhylogeneticTree, Woese 1990.PNG|thumb|right|500px|Phylogenetic tree based on SSU rRNA sequence comparison, with a color for each of the three domains of life.<ref name="Woese_1990"/>]]

SSU rRNA sequences are widely used for working out [[Phylogenetics|evolutionary relationships]] among organisms, since they are of ancient origin and are found in all known forms of life.<ref name="Woese_1990">{{cite journal | last1 = Woese | first1 = Carl R.| authorlink1 = Carl Woese | last2 = Kandler | first2 =O | last3 = Wheelis | first3= M | title = Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya | url=http://www.pnas.org/cgi/reprint/87/12/4576 | journal = Proc Natl Acad Sci USA | volume = 87 | issue = 12 | pages = 4576–9 | year = 1990 | pmid = 2112744 | doi = 10.1073/pnas.87.12.4576 | pmc = 54159 | bibcode=1990PNAS...87.4576W}}</ref>



==See also==

== See also ==

*[[LSU rRNA]]: the '''l'''arge '''s'''ub'''u'''nit ribosomal ribonucleic acid.

*[[LSU rRNA]]: the '''l'''arge '''s'''ub'''u'''nit ribosomal ribonucleic acid.


==References==

== References ==

{{reflist}}

{{reflist}}


{{Ribosome subunits}}



[[Category:Ribosomal RNA]]

[[Category:Ribosomal RNA]]


Latest revision as of 18:25, 26 August 2023

Small subunit ribosomal ribonucleic acid (SSU rRNA) is the smaller of the two major RNA components of the ribosome. Associated with a number of ribosomal proteins, the SSU rRNA forms the small subunit of the ribosome. It is encoded by SSU-rDNA.

SSU rRNA
Identifiers
SymbolSSU
RfamCL00111
Other data
PDB structuresPDBe

Characteristics[edit]

Characteristics of the SSU rRNA for exemplary species.
Type SSU rRNA size Species Length Accession Reference
Bacterial (Prokaryotic) 16S Escherichia coli 1,541 nt J01859.1 [1]
Archaeal (Prokaryotic) 16S Halobacterium salinarum 1,473 nt M38280.1 [2]
Eukaryotic 18S Homo sapiens 1,969 nt M10098.1 [3]
Mitochondrial 12S Homo sapiens 954 nt NC_012920.1 [4][5]
Plastid 16S Arabidopsis thaliana 1,491 nt NC_000932.1 [6]

Use in phylogenetics[edit]

SSU rRNA sequences are widely used for determining evolutionary relationships among organisms, since they are of ancient origin and are found in all known forms of life.[7]

See also[edit]

References[edit]

  1. ^ "Escherichia coli 16S ribosomal RNA". 13 June 2017.
  • ^ "Halobacterium salinarum 16S ribosomal RNA". 7 August 1991.
  • ^ "Homo sapiens 18S ribosomal RNA (nuclear)". 2 May 1986.
  • ^ Homo sapiens mitochondrion, complete genome. "Revised Cambridge Reference Sequence (rCRS): accession NC_012920", National Center for Biotechnology Information. Retrieved on 20 February 2017.
  • ^ Anderson S, Bankier AT, Barrell BG, de Bruijn MH, Coulson AR, Drouin J, et al. (April 1981). "Sequence and organization of the human mitochondrial genome". Nature. 290 (5806): 457–465. Bibcode:1981Natur.290..457A. doi:10.1038/290457a0. PMID 7219534. S2CID 4355527.
  • ^ "Arabidopsis thaliana 16S ribosomal RNA (chloroplast)". 26 September 2019.
  • ^ Woese CR, Kandler O, Wheelis ML (June 1990). "Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya". Proceedings of the National Academy of Sciences of the United States of America. 87 (12): 4576–4579. Bibcode:1990PNAS...87.4576W. doi:10.1073/pnas.87.12.4576. PMC 54159. PMID 2112744.

  • Retrieved from "https://en.wikipedia.org/w/index.php?title=SSU_rRNA&oldid=1172381535"

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