| Season | 1999–2000 |
|---|---|
| Champions | Synot |
| Promoted | Synot Plzeň |
| Relegated | Poštorná Frýdek-Místek |
| Matches played | 240 |
| Goals scored | 651 (2.71 per match) |
| Top goalscorer | Vladimír Malár (24) |
| Average attendance | 1,305 |
← 1998–99 2000–01 → | |
The 1999–2000 Czech 2. Liga was the seventh season of the 2. česká fotbalová liga, the second tier of the Czech football league. Eventual winners, FC Synot clinched promotion to the Czech First League five matches before the end of the season.[1]
| Pos | Team | Pld | W | D | L | GF | GA | GD | Pts | Promotion or relegation |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Synot (C, P) | 30 | 24 | 4 | 2 | 76 | 29 | +47 | 76 | Promotion to 2000–01 1. Liga |
| 2 | Viktoria Plzeň (P) | 30 | 17 | 8 | 5 | 50 | 22 | +28 | 59 | |
| 3 | Ratíškovice | 30 | 14 | 9 | 7 | 48 | 33 | +15 | 51 | |
| 4 | Most | 30 | 10 | 15 | 5 | 43 | 32 | +11 | 45 | |
| 5 | NH Ostrava (R) | 30 | 11 | 10 | 9 | 46 | 39 | +7 | 43 | |
| 6 | Lázně Bohdaneč | 30 | 11 | 10 | 9 | 36 | 33 | +3 | 43 | |
| 7 | Neratovice | 30 | 12 | 6 | 12 | 42 | 45 | −3 | 42 | |
| 8 | Zlín | 30 | 10 | 11 | 9 | 44 | 33 | +11 | 41 | |
| 9 | Xaverov | 30 | 10 | 7 | 13 | 34 | 41 | −7 | 37 | |
| 10 | Třinec | 30 | 9 | 10 | 11 | 39 | 60 | −21 | 37 | |
| 11 | Karviná | 30 | 8 | 9 | 13 | 44 | 48 | −4 | 33 | |
| 12 | Prostějov | 30 | 8 | 9 | 13 | 39 | 47 | −8 | 33 | |
| 13 | Mladá Boleslav | 30 | 7 | 12 | 11 | 31 | 40 | −9 | 33 | |
| 14 | Vítkovice | 30 | 7 | 12 | 11 | 23 | 38 | −15 | 33 | |
| 15 | Poštorná (R) | 30 | 5 | 10 | 15 | 30 | 47 | −17 | 25 | Relegation to 2000–01 MSFL |
| 16 | Frýdek-Místek (R) | 30 | 4 | 4 | 22 | 26 | 64 | −38 | 16 |
| Rank | Scorer | Club | Goals |
|---|---|---|---|
| 1 |  Vladimír Malár
|
Synot | 24 |
| 2 | Karel Kulyk
|
Ratíškovice | 16 |
| 3 | Vladimír Chalupa
|
NH Ostrava | 12 |
|
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