Jump to content
 







Main menu
   


Navigation  



Main page
Contents
Current events
Random article
About Wikipedia
Contact us
Donate
 




Contribute  



Help
Learn to edit
Community portal
Recent changes
Upload file
 








Search  

































Create account

Log in
 









Create account
 Log in
 




Pages for logged out editors learn more  



Contributions
Talk
 



















Contents

   



(Top)
 


1 Project goals and scope  



1.1  Number of gene articles  





1.2  Expansion  





1.3  Proteins encoded by genes  







2 Gene Wiki generated content  





3 Response  





4 References  





5 Further reading  





6 External links  














Gene Wiki






العربية
Français
Italiano
Português
 

Edit links
 









Article
Talk
 

















Read
Edit
View history
 








Tools
   


Actions  



Read
Edit
View history
 




General  



What links here
Related changes
Upload file
Special pages
Permanent link
Page information
Cite this page
Get shortened URL
Download QR code
Wikidata item
 




Print/export  



Download as PDF
Printable version
 
















Appearance
   

 






From Wikipedia, the free encyclopedia
 


The Gene Wiki is a project within Wikipedia that aims to describe the relationships and functions of all human genes. It was established to transfer information from scientific resources to Wikipedia stub articles.[1][2][3]

The Gene Wiki project also initiated publication of gene-specific review articles in the journal Gene, together with the editing of the gene-specific pages in Wikipedia.[4]

The Gene Wiki project in collaboration with the journal Gene was terminated in May 2022, ten years after the project's initiation. A report by the project's leaders summarizes the project's achievements.[5]

Project goals and scope[edit]

Number of gene articles[edit]

The human genome contains an estimated 20,000–25,000 protein-coding genes.[6] The goal of the Gene Wiki project is to create seed articles for every notable human gene, that is, every gene whose function has been assigned in the peer-reviewed scientific literature. Approximately half of human genes have assigned function, therefore the total number of articles seeded by the Gene Wiki project would be expected to be in the range of 10,000–15,000. To date,[as of?] approximately 11,000 articles have been created or augmented to include Gene Wiki project content.[citation needed]

Expansion[edit]

Once seed articles have been established, the hope and expectation is that these will be annotated and expanded by editors ranging in experience from the lay audience to students to professionals and academics.[1]

Proteins encoded by genes[edit]

Only a small portion of the genome actually encodes protein in the human genome. Understanding the function of a gene that codes for a protein generally requires understanding of the function of the corresponding protein. In addition to including basic information about the gene, the project therefore also includes information about the protein encoded by the gene. The function of other portions of the genome, non-coding DNA, also called "junk" DNA in the past because they had no apparent function, actually are thought to have regulatory functions.

Gene Wiki generated content[edit]

Stubs for the Gene Wiki project are created by a bot and contain links to the following primary gene/protein databases:

Response[edit]

Areport found that between 2013 and 2017, the content which Gene Wiki contributed to Wikipedia got crowdsourced development over time.[8]

References[edit]

  1. ^ a b Huss JW, Orozco C, Goodale J, Wu C, Batalov S, Vickers TJ, Valafar F, Su AI (July 2008). "A Gene Wiki for Community Annotation of Gene Function". PLOS Biology. 6 (7): e175. doi:10.1371/journal.pbio.0060175. PMC 2443188. PMID 18613750.
  • ^ Huss JW, Orozco C, Goodale J, Wu C, Batalov S, Vickers TJ, Valafar F, Su AI. "SciVee Pubcast: A Gene Wiki for Community Annotation of Gene Function". Archived from the original on 2010-07-24. Retrieved 2008-11-19.
  • ^ Huss JW; Lindenbaum P; Martone M; et al. (January 2010). "The Gene Wiki: community intelligence applied to human gene annotation". Nucleic Acids Research. 38 (Database issue): D633–9. doi:10.1093/nar/gkp760. PMC 2808918. PMID 19755503.
  • ^ Tsueng G, Good BM, Ping P, Golemis E, Hanukoglu I, van Wijnen AJ, Su AI (2 May 2016). "Gene Wiki Reviews-Raising the quality and accessibility of information about the human genome". Gene. 592 (2): 235–8. doi:10.1016/j.gene.2016.04.053. PMC 5944608. PMID 27150585.
  • ^ van Wijnen AJ, Golemis E, Hanukoglu I, Tsui SK, Hu E, Ul-Hasan S, Joy J, Su AI, Tsueng G (July 2022). "A retrospective evaluation of a decade of Gene Wiki Reviews and their impact" (PDF). Gene. 830: 146534. doi:10.1016/j.gene.2022.146534. PMID 35525475.
  • ^ Clamp M; Fry B; Kamal M; Xie X; Cuff J; Lin MF; Kellis M; Lindblad-Toh K; Lander ES (December 2007). "Distinguishing protein-coding and noncoding genes in the human genome". Proceedings of the National Academy of Sciences USA. 104 (49): 19428–33. doi:10.1073/pnas.0709013104. PMC 2148306. PMID 18040051.
  • ^ Su AI, Wiltshire T, Batalov S, Lapp H, Ching KA, Block D, Zhang J, Soden R, Hayakawa M, Kreiman G, Cooke MP, Walker JR, Hogenesch JB (April 2004). "A gene atlas of the mouse and human protein-encoding transcriptomes". Proceedings of the National Academy of Sciences USA. 101 (16): 6062–7. Bibcode:2004PNAS..101.6062S. doi:10.1073/pnas.0400782101. PMC 395923. PMID 15075390.
  • ^ Zinovyev, Andrei; Czerwinska, Urszula; Cantini, Laura; Barillot, Emmanuel; Frahm, Klaus M.; Shepelyansky, Dima L.; Rzhetsky, Andrey (18 February 2020). "Collective intelligence defines biological functions in Wikipedia as communities in the hidden protein connection network". PLOS Computational Biology. 16 (2): e1007652. Bibcode:2020PLSCB..16E7652Z. doi:10.1371/journal.pcbi.1007652. PMC 7048313. PMID 32069277.
  • Further reading[edit]

  • Good BM, Clarke EL, de Alfaro L, Su AI (January 2012). "The Gene Wiki in 2011: community intelligence applied to human gene annotation". Nucleic Acids Research. 40 (Database issue): D1255–61. doi:10.1093/nar/gkr925. PMC 3245148. PMID 22075991.
  • Good BM, Clarke EL, Loguercio S, Su AI (2012). "Linking genes to diseases with a SNPedia-Gene Wiki mashup". J Biomed Semantics. 3 (Suppl 1): S6. doi:10.1186/2041-1480-3-S1-S6. PMC 3337266. PMID 22541597.
  • Su AI, Good BM, van Wijnen AJ (December 2013). "Gene Wiki Reviews: marrying crowdsourcing with traditional peer review". Gene. 531 (2): 125. doi:10.1016/j.gene.2013.08.093. PMID 24012870.
  • External links[edit]


    Retrieved from "https://en.wikipedia.org/w/index.php?title=Gene_Wiki&oldid=1195816766"

    Categories: 
    History of Wikipedia
    Wikis
    Genes
    Hidden categories: 
    Articles with short description
    Short description is different from Wikidata
    All articles with vague or ambiguous time
    Vague or ambiguous time from January 2023
    All articles with unsourced statements
    Articles with unsourced statements from April 2022
     



    This page was last edited on 15 January 2024, at 11:48 (UTC).

    Text is available under the Creative Commons Attribution-ShareAlike License 4.0; additional terms may apply. By using this site, you agree to the Terms of Use and Privacy Policy. Wikipedia® is a registered trademark of the Wikimedia Foundation, Inc., a non-profit organization.



    Privacy policy

    About Wikipedia

    Disclaimers

    Contact Wikipedia

    Code of Conduct

    Developers

    Statistics

    Cookie statement

    Mobile view



    Wikimedia Foundation
    Powered by MediaWiki