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Contents

   



(Top)
 


1 See also  





2 References  





3 Further reading  














SOX8






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From Wikipedia, the free encyclopedia
 


SOX8

Identifiers

Aliases

SOX8, SRY-box 8, SRY-box transcription factor 8

External IDs

OMIM: 605923; MGI: 98370; HomoloGene: 7950; GeneCards: SOX8; OMA:SOX8 - orthologs

Gene location (Human)

Chromosome 16 (human)

Chr.

Chromosome 16 (human)[1]

Chromosome 16 (human)

Genomic location for SOX8

Genomic location for SOX8

Band

16p13.3

Start

981,770 bp[1]

End

986,979 bp[1]

Gene location (Mouse)

Chromosome 17 (mouse)

Chr.

Chromosome 17 (mouse)[2]

Chromosome 17 (mouse)

Genomic location for SOX8

Genomic location for SOX8

Band

17 A3.3|17 12.69 cM

Start

25,784,866 bp[2]

End

25,789,660 bp[2]

Bgee

Mouse (ortholog)


  • external globus pallidus

  • subthalamic nucleus

  • parotid gland

  • pars reticulata

  • ventral tegmental area

  • medulla oblongata

  • spinal cord

  • C1 segment

  • superior vestibular nucleus

  • lumbar subsegment of spinal cord

  • zygote

  • fourth metatarsal bone

  • Bowman's capsule

  • second metatarsal bone

  • visual cortex

  • third metatarsal bone

  • primary visual cortex

  • secondary oocyte
  • More reference expression data

    BioGPS

    n/a

    Molecular function

  • sequence-specific DNA binding
  • DNA-binding transcription factor activity
  • transcription factor binding
  • protein heterodimerization activity
  • RNA polymerase II core promoter sequence-specific DNA binding
  • DNA-binding transcription factor activity, RNA polymerase II-specific
  • DNA-binding transcription activator activity, RNA polymerase II-specific
  • Cellular component

  • nucleus
  • Biological process

  • cell fate commitment
  • negative regulation of myoblast differentiation
  • positive regulation of branching involved in ureteric bud morphogenesis
  • male gonad development
  • peripheral nervous system development
  • regulation of transcription, DNA-templated
  • morphogenesis of a branching epithelium
  • ureter morphogenesis
  • regulation of hormone levels
  • oligodendrocyte differentiation
  • negative regulation of apoptotic process
  • in utero embryonic development
  • cell maturation
  • Sertoli cell development
  • transcription, DNA-templated
  • metanephric nephron tubule formation
  • positive regulation of transcription, DNA-templated
  • negative regulation of photoreceptor cell differentiation
  • enteric nervous system development
  • renal vesicle induction
  • positive regulation of kidney development
  • positive regulation of gene expression
  • retina development in camera-type eye
  • astrocyte fate commitment
  • osteoblast differentiation
  • neural crest cell migration
  • spermatogenesis
  • retinal rod cell differentiation
  • skeletal muscle cell differentiation
  • adipose tissue development
  • negative regulation of transcription, DNA-templated
  • fat cell differentiation
  • signal transduction
  • positive regulation of transcription by RNA polymerase II
  • positive regulation of gliogenesis
  • morphogenesis of an epithelium
  • central nervous system development
  • Sources:Amigo / QuickGO

    Species

    Human

    Mouse

    Entrez

    Ensembl

    UniProt

    RefSeq (mRNA)

    NM_014587

    NM_011447

    RefSeq (protein)

    NP_055402

    NP_035577

    Location (UCSC)

    Chr 16: 0.98 – 0.99 Mb

    Chr 17: 25.78 – 25.79 Mb

    PubMed search

    [3]

    [4]

    Wikidata

    Transcription factor SOX-8 is a protein that in humans is encoded by the SOX8 gene.[5][6][7]

    This gene encodes a member of the SOX (SRY-related HMG-box) family of transcription factors involved in the regulation of embryonic development and in the determination of the cell fate. The encoded protein may act as a transcriptional activator after forming a protein complex with other proteins. This protein may be involved in brain development and function. Haploinsufficiency for this protein may contribute to the mental retardation found in haemoglobin H-related mental retardation (ATR-16 syndrome).[7]

    See also[edit]

    References[edit]

  • ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  • ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  • ^ Pfeifer D, Poulat F, Holinski-Feder E, Kooy F, Scherer G (Apr 2000). "The SOX8 gene is located within 700 kb of the tip of chromosome 16p and is deleted in a patient with ATR-16 syndrome". Genomics. 63 (1): 108–16. doi:10.1006/geno.1999.6060. PMID 10662550.
  • ^ Schepers GE, Bullejos M, Hosking BM, Koopman P (Apr 2000). "Cloning and characterisation of the Sry-related transcription factor gene Sox8". Nucleic Acids Res. 28 (6): 1473–80. doi:10.1093/nar/28.6.1473. PMC 111037. PMID 10684944.
  • ^ a b "Entrez Gene: SOX8 SRY (sex determining region Y)-box 8".
  • Further reading[edit]

  • Cheng YC, Lee CJ, Badge RM, et al. (2001). "Sox8 gene expression identifies immature glial cells in developing cerebellum and cerebellar tumours". Brain Res. Mol. Brain Res. 92 (1–2): 193–200. doi:10.1016/S0169-328X(01)00147-4. PMID 11483257.
  • Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
  • Gevaert K, Goethals M, Martens L, et al. (2004). "Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides". Nat. Biotechnol. 21 (5): 566–9. doi:10.1038/nbt810. PMID 12665801. S2CID 23783563.
  • Schepers G, Wilson M, Wilhelm D, Koopman P (2003). "SOX8 is expressed during testis differentiation in mice and synergizes with SF1 to activate the Amh promoter in vitro". J. Biol. Chem. 278 (30): 28101–8. doi:10.1074/jbc.M304067200. PMID 12732652.
  • Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi:10.1038/ng1285. PMID 14702039.
  • Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
  • Martin J, Han C, Gordon LA, et al. (2005). "The sequence and analysis of duplication-rich human chromosome 16" (PDF). Nature. 432 (7020): 988–94. Bibcode:2004Natur.432..988M. doi:10.1038/nature03187. PMID 15616553. S2CID 4362044.
  • Wissmüller S, Kosian T, Wolf M, et al. (2006). "The high-mobility-group domain of Sox proteins interacts with DNA-binding domains of many transcription factors". Nucleic Acids Res. 34 (6): 1735–44. doi:10.1093/nar/gkl105. PMC 1421504. PMID 16582099.
  • (1) Basic domains

    (1.1) Basic leucine zipper (bZIP)

  • 1
  • 2
  • 3
  • 4
  • 5
  • 6
  • 7
  • AP-1
  • BACH
  • BATF
  • BLZF1
  • C/EBP
  • CREB
  • CREM
  • DBP
  • DDIT3
  • GABPA
  • GCN4
  • HLF
  • MAF
  • NFE
  • NFIL3
  • NRL
  • NRF
  • XBP1
  • (1.2) Basic helix-loop-helix (bHLH)

    Group A

  • ASCL2
  • ATOH1
  • HAND
  • MESP2
  • Myogenic regulatory factors
  • NeuroD
  • Neurogenins
  • OLIG
  • Paraxis
  • SLC
  • Twist
  • Group B

  • Myc
  • MXD4
  • TCF4
  • Group C
    bHLH-PAS

  • AHRR
  • ARNT
  • CLOCK
  • HIF
  • NPAS
  • PER
  • SIM
  • Group D

    • BHLH
  • 3
  • 9
  • Pho4
  • ID
  • Group E

    • HES
  • 2
  • 3
  • 4
  • 5
  • 6
  • 7
  • HEY
  • Group F
    bHLH-COE

    (1.3) bHLH-ZIP

  • MAX
  • MITF
  • MNT
  • MLX
  • MLXIPL
  • MXI1
  • Myc
  • SREBP
  • USF1
  • (1.4) NF-1

  • B
  • C
  • X
  • SMAD
  • (1.5) RF-X

    • RFX
  • 2
  • 3
  • 4
  • 5
  • 6
  • ANK
  • (1.6) Basic helix-span-helix (bHSH)

  • β
  • γ
  • δ
  • ε
  • (2) Zinc finger DNA-binding domains

    (2.1) Nuclear receptor (Cys4)

    subfamily 1

  • β
  • CAR
  • FXR
  • LXR
  • PPAR
  • PXR
  • RAR
  • ROR
  • Rev-ErbA
  • VDR
  • subfamily 2

  • II
  • Ear-2
  • HNF4
  • PNR
  • RXR
  • Testicular receptor
  • TLX
  • subfamily 3

  • Estrogen
  • Glucocorticoid
  • Mineralocorticoid
  • Progesterone
  • Estrogen related
  • subfamily 4

  • NOR1
  • NURR1
  • subfamily 5

  • SF1
  • subfamily 6

    subfamily 0

  • SHP
  • (2.2) Other Cys4

  • 2
  • 3
  • 4
  • 5
  • 6
  • MTA
  • TRPS1
  • (2.3) Cys2His2

  • TFIIB
  • TFIID
  • TFIIE
  • TFIIF
  • 1
  • 2
  • (2.4) Cys6

    (2.5) Alternating composition

  • DIDO1
  • GRLF1
  • ING
  • JARID
  • JMJD1B
  • (2.6) WRKY

    (3) Helix-turn-helix domains

    Antennapedia
    ANTP class

    protoHOX
    Hox-like

  • 2
  • Xlox
  • Cdx
  • 2
  • 4
  • extended Hox: Evx1
  • Evx2
  • MEOX1
  • MEOX2
  • Homeobox
  • GBX1
  • GBX2
  • MNX1
  • metaHOX
    NK-like

  • BARHL2
  • BARX1
  • BARX2
  • BSX
  • DBX
  • DLX
  • EMX
  • EN
  • HHEX
  • HLX
  • LBX1
  • LBX2
  • MSX
  • NANOG
  • NKX
  • NATO
  • TLX1
  • TLX2
  • TLX3
  • VAX1
  • VAX2
  • other

  • CRX
  • CUTL1
  • FHL
  • HESX1
  • HOPX
  • LMX
  • NOBOX
  • TALE
  • PHF
  • POU domain
  • SATB2
  • ZEB
  • (3.2) Paired box

  • 2
  • 3
  • 4
  • 5
  • 6
  • 7
  • 8
  • 9
  • PRRX
  • PROP1
  • PHOX
  • RAX
  • SHOX
  • SHOX2
  • VSX1
  • VSX2
  • Bicoid
  • (3.3) Fork head / winged helix

  • 2
  • 3
  • 4
  • 5
  • FOX proteins
  • (3.4) Heat shock factors

  • 2
  • 4
  • (3.5) Tryptophan clusters

    • ELF
  • 4
  • 5
  • EGF
  • ELK
  • ERF
  • ETS
  • ETV
  • FLI1
  • Interferon regulatory factors
  • MYB
  • MYBL2
  • (3.6) TEA domain

    • transcriptional enhancer factor
  • 2
  • 3
  • 4
  • (4) β-Scaffold factors with minor groove contacts

  • NFKB2
  • REL
  • RELA
  • RELB
  • NFAT
  • (4.2) STAT

  • 2
  • 3
  • 4
  • 5
  • 6
  • (4.3) p53-like

  • TP63
  • p73
  • TBX
  • MYRF
  • (4.4) MADS box

  • B
  • C
  • D
  • SRF
  • (4.6) TATA-binding proteins

  • TBPL1
  • (4.7) High-mobility group

  • HMGB
  • HMGN
  • HNF
  • SOX
  • SRY
  • SSRP1
  • TCF/LEF
  • TOX
  • (4.9) Grainyhead

    (4.10) Cold-shock domain

  • YBX1
  • (4.11) Runt

  • CBFA2T3
  • RUNX1
  • RUNX2
  • RUNX3
  • RUNX1T1
  • (0) Other transcription factors

    (0.2) HMGI(Y)

  • 2
  • HBP1
  • (0.3) Pocket domain

  • RBL1
  • RBL2
  • (0.5) AP-2/EREBP-related factors

  • EREBP
  • B3
  • (0.6) Miscellaneous

  • 1B
  • 2
  • 3A
  • 3B
  • 4A
  • CAP
  • IFI
  • MLL
  • MNDA
  • NFY
  • Rho/Sigma
  • see also transcription factor/coregulator deficiencies


  • t
  • e

  • Retrieved from "https://en.wikipedia.org/w/index.php?title=SOX8&oldid=1118739275"

    Categories: 
    Genes on human chromosome 16
    Transcription factors
    Human chromosome 16 gene stubs
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    This page was last edited on 28 October 2022, at 16:05 (UTC).

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